Gene Conservation Laboratory
Publications
Publications - Laboratory Reports
Updated January 2023
For additional information see the following: glossary of terms for salmon management and a glossary of terms for genetics analysis.
2023, In press, and In review
Dann, T. H., H. A. Hoyt, E. M. Lee, E. K. C. Fox, and M. B. Foster. 2023. Genetic stock composition of chum salmon harvested in commercial salmon fisheries of the South Alaska Peninsula, 2022. Alaska Department of Fish and Game, Special Publication No. 23-07, Anchorage.
Excel tables from 23-07. For data questions, contact Tyler Dann.
2022
Barclay, A. W., S. Gilk-Baumer, K. Shedd, J. Botz, and C. Habicht. 2022. Genetic stock composition of the commercial harvest of Chinook salmon in Copper River District, 2018-2021. Alaska Department of Fish and Game, Fishery Data Series No. 22-35, Anchorage.
Booz, M. D., K. M. Gruenthal, and C. Habicht. 2022. Operational plan: Population genetics and reproductive connectivity of Pacific razor clams in Cook Inlet, Alaska. Alaska Department of Fish and Game, Division of Sport Fish, Regional Operational Plan No. ROP.SF.2A.2022.01, Anchorage.
Eskelin, A., and A. W. Barclay. 2022. Eastside set gillnet Chinook salmon harvest composition in Upper Cook Inlet, Alaska, 2021. Alaska Department of Fish and Game, Fishery Data Series No. 22-06, Anchorage.
Eskelin, T., and A. W. Barclay. 2022. Russian River early-run sockeye salmon run timing into the Kenai River, 2018–2020. Alaska Department of Fish and Game, Fishery Data Series No. 22-33, Anchorage.
Gruenthal, K. M., and C. Habicht. 2022. Literature review for implementation of the 50-50 rule for cultivation of seaweeds and other aquatic plants in Alaska. Alaska Department of Fish and Game, Division of Commercial Fisheries, Regional Information Report No. 2A22-01, Anchorage.
Jalbert, C. S., S. C. Heinl, A. Reynolds Manney, and K. R. Shedd. 2022. Commercial harvest of Klawock Lake sockeye salmon in the District 103 and 104 purse seine fisheries, Southeast Alaska, 2018–2021. Alaska Department of Fish and Game, Fishery Data Series No. 22-34, Anchorage.
Shedd, K. R., D. L. Leonard, and J. V. Nichols. 2022. Mixed stock analysis of Chinook salmon harvested in Southeast Alaska commercial troll and sport fisheries, 2019. Alaska Department of Fish and Game, Fishery Data Series No. 22-20, Anchorage.
2021
Barclay, A. W., and E. L. Chenoweth. 2021. Genetic stock identification of Upper Cook Inlet sockeye salmon harvest, 2020. Alaska Department of Fish and Game, Division of Commercial Fisheries, Regional Information Report No. 5J21-04, Anchorage.
Barclay, A. W., W. Cheng., C. Habicht., T. H. Dann, S. Gilk-Baumer, and H. A. Hoyt. 2021. Researching potential options for an on-vessel portable genotyping laboratory for the Port Moller salmon test fishery. Alaska Department of Fish and Game, Division of Commercial Fisheries, Regional Information Report No. 5J21- 03, Anchorage.
Barclay, A. W., H. A. Hoyt, and C. Habicht. 2021. Genetic population structure of Chinook salmon from Middle and Upper Susitna River: A report to Alaska Energy Authority, Susitna-Watana hydroelectric project (submitted July 25, 2017). Alaska Department of Fish and Game, Division of Commercial Fisheries, Regional Information Report No. 5J21-02, Anchorage.
Eskelin, A., and A. W. Barclay. 2021. Eastside set gillnet Chinook salmon harvest composition in Upper Cook Inlet, Alaska, 2020. Alaska Department of Fish and Game, Fishery Data Series No. 21-11, Anchorage.
Otis, E. O., G. J. Hollowell, A. W. Barclay, and X. Zhang. 2021. Recovery and analysis of thermal mark hatchery salmon otoliths in Lower Cook Inlet, 2021. Alaska Department of Fish and Game, Division of Commercial Fisheries, Regional Operational Plan ROP.CF.2A.2021.02, Homer.
Schuster, M., M. D. Booz, and A. W. Barclay. 2021. Chinook salmon sport harvest genetic stock and biological compositions in Cook Inlet salt waters, 2014–2018. Alaska Department of Fish and Game, Fishery Manuscript No. 21-04, Anchorage.
Shedd, K. R., D. F. Evenson, and J. V. Nichols. 2021. Mixed stock analysis of Chinook salmon harvested in Southeast Alaska commercial troll and sport fisheries, 2017.Alaska Department of Fish and Game, Fishery Data Series No. 21-02, Anchorage.
Shedd, K. R., D. L. Leonard, and J. V. Nichols. 2021. Mixed stock analysis of Chinook salmon harvested in Southeast Alaska commercial troll and sport fisheries, 2018. Alaska Department of Fish and Game, Fishery Data Series No. 21-23, Anchorage.
2020
Barclay, A. W. 2020. Compilation (2005–2019) of genetic stock identification estimates of sockeye salmon harvest from sampled Upper Cook Inlet commercial fisheries; Susitna River components reported both separately and combined. Alaska Department of Fish and Game, Division of Commercial Fisheries, Regional Information Report 5J20-02, Anchorage.
Barclay, A. W. 2020. Genetic stock identification of Upper Cook Inlet sockeye salmon harvest, 2019. Alaska Department of Fish and Game, Division of Commercial Fisheries, Regional Information Report 5J20-01, Anchorage.
Eskelin, A., and A. W. Barclay. 2020. Eastside set gillnet Chinook salmon harvest composition in Upper Cook Inlet, Alaska, 2019. Alaska Department of Fish and Game, Fishery Data Series No. 20-06, Anchorage.
Howard, K. G., S. Garcia, J. Murphy, and T. H. Dann. 2020. Northeastern Bering Sea juvenile Chinook salmon survey, 2017 and Yukon River adult run forecasts, 2018-2020. Alaska Department of Fish and Game, Fishery Data Series No. 20-08, Anchorage.
Larson, S., T. H. Dann, and P. Drobny. 2020. Yukon River subsistence harvest ASL and genetic stock identification, 2018. Alaska Department of Fish and Game, Division of Commercial Fisheries, Regional Information Report 3A20-03, Anchorage.
St. Saviour, A., A. W. Barclay, and N. Logelin. 2020. Draft Report for the 2020 Upper Cook Inlet Board of Fish Meeting: Northern Cook Inlet Chinook salmon marine harvest stock composition, 2016–2017. Alaska Department of Fish and Game, Regional Information Report 2A20-03, Anchorage.
St. Saviour, A., A. W. Barclay, and N. Logelin. 2020. Northern Cook Inlet Chinook salmon marine harvest stock composition, 2016–2017. Alaska Department of Fish and Game, Fishery Data Series No. 20-27, Anchorage.
2019
Barclay, A. W. 2019. Genetic stock identification of Upper Cook Inlet sockeye salmon harvest, 2015–2018. Alaska Department of Fish and Game, Regional Information Report 5J19-02, Anchorage.
Barclay, A. W., and C. Habicht. 2019. Genetic baseline for Cook Inlet coho salmon and evaluations for mixed stock analysis. Alaska Department of Fish and Game, Fishery Manuscript Series No. 19-19, Anchorage.
Barclay, A. W., D. F. Evenson, and C. Habicht. 2019. New genetic baseline for Upper Cook Inlet Chinook salmon allows for the identification of more stocks in mixed stock fisheries: 413 loci and 67 populations. Alaska Department of Fish and Game, Fishery Manuscript Series No. 19-06, Anchorage.
Barclay, A. W., E. Chenoweth, and C. Habicht. 2019. Reanalysis of Upper Cook Inlet coho salmon harvest from 2013 to 2016 using an updated genetic baseline.Alaska Department of Fish and Game, Division of Commercial Fisheries, Regional Information Report 5J19-06, Anchorage.
Barclay, A. W., M. Schuster, C. M. Kerkvliet, M. D. Booz, B. J. Failor, and C. Habicht. 2019. Coded wire tag augmented genetic mixed stock analysis of Chinook salmon harvested in Cook Inlet marine sport fishery, 2014–2017. Alaska Department of Fish and Game, Fishery Manuscript No. 19-04, Anchorage.
Barclay, A. W., M. Schuster, C. M. Kerkvliet, M. D. Booz, B. J. Failor, and C. Habicht. 2019. Coded wire tag augmented genetic mixed stock analysis of Chinook salmon harvested in Cook Inlet marine sport fishery, 2014–2017. Alaska Department of Fish and Game, Fishery Manuscript No. 19-04, Anchorage.
Eskelin, A., and A. W. Barclay. 2019. Eastside set gillnet Chinook salmon harvest composition in Upper Cook Inlet, Alaska, 2018, with large fish composition estimates for 2010-2014. Alaska Department of Fish and Game, Fishery Data Series No. 19-26, Anchorage.
Grant., W. Stewart. Phylogeography of the kelps Saccharina latissima, Hedophyllum nigripes, and Alaria spp. in Alaska and implications for resource management (PDF 21,664 kB). Final report for Study 1618, North Pacific Research Board. August 2019.
Howard, K. G., C. Habicht, E. Russ, A. Olson, J. Nichols, and M. Schuster. 2019. Operational Plan: Genetic sampling of yelloweye and black rockfish from inside and outside waters of Prince William Sound, North Gulf of Alaska, and Southeast Alaska. Alaska Department of Fish and Game, Regional Operational Plan ROP.SF.4A.2019.01, Anchorage.
Howard, K. G., S. Garcia, J. Murphy, and T. H. Dann. 2019. Juvenile Chinook salmon abundance index and survey feasibility assessment in the Northern Bering Sea, 2014–2016. (PDF 3,488 kB) Alaska Department of Fish and Game, Fishery Data Series No. 19-04, Anchorage.
St. Saviour, A., A. W. Barclay, and N. Logelin. 2019. Northern Cook Inlet Chinook salmon marine harvest stock composition, 2014–2015. Alaska Department of Fish and Game, Fishery Data Series No. 19-03, Anchorage.
West, F. and D. Prince. 2019. Genetic Stock Identification of Pilot Station Chinook Salmon, 2018 (PDF 743 kB). Alaska Department of Fish and Game, Divisions of Sport Fish and Commercial Fisheries, Regional Information Report 3A19-09, Anchorage.
West, F. and T. Dann. 2019. Genetic Stock Identification of Pilot Station Chinook Salmon, 2017 (PDF 858 kB). Alaska Department of Fish and Game, Divisions of Sport Fish and Commercial Fisheries, Regional Information Report 3A19-08, Anchorage.
2018
Campbell, J., N. A. Decovich, and A. W. Barclay. 2018. Operational Plan: Susitna River Chinook salmon inriver abundance. Alaska Department of Fish and Game, Regional Operational Plan ROP.SF.2A.2018.08, Anchorage.
Dann, T. H., C. Habicht, W. D. Templin, L. W. Seeb, G. McKinney, and J. E. Seeb. 2018. Identification of genetic markers useful for mixed stock analysis of Chinook salmon in Cook Inlet, Alaska. Alaska Department of Fish and Game, Division of Commercial Fisheries, Regional Information Report 5J18-04, Anchorage.
Eskelin, A., and A. W. Barclay. 2018. Eastside set gillnet Chinook salmon harvest composition in Upper Cook Inlet, Alaska, 2017. Alaska Department of Fish and Game, Fishery Data Series No. 18-30, Anchorage.
Eskelin, T., and A. W. Barclay. 2018. Operational plan: Russian River early run sockeye salmon run timing study. Alaska Department of Fish and Game, Regional Operational Plan ROP.SF.2A.2018.10, Anchorage.
Eskelin, T., and A. W. Barclay. 2018. Operational Plan: Upper Cook Inlet commercial eastside set gillnet Chinook salmon harvest composition study. Alaska Department of Fish and Game, Regional Operational Plan ROP.SF.2A.2018.14, Anchorage.
Evenson, D. F., C. Habicht, M. Stopha, A. R. Munro, T. R. Meyers, and W. D. Templin. 2018. Salmon hatcheries in Alaska — A review of the implementation of plans, permits, and policies designed to provide protection for wild stocks. Alaska Department of Fish and Game, Special Publication No. 18-12, Anchorage.
Gilk-Baumer, S., D. F. Evenson, K. Shedd, and E. L. Jones. 2017. Mixed stock analysis of Chinook salmon harvested in Southeast Alaska commercial troll and sport fisheries, 2016. Alaska Department of Fish and Game, Fishery Data Series No. 18-01, Anchorage.
Grant., W. Stewart and C. Siddon. Stock Structure of Aleutian Island Golden King Crab, Final report for Study 1526 (PDF 464 kB), North Pacific Research Board. April 2018.
Rogers Olive, S.D., E. K. C. Fox, and S. E. Gilk-Baumer. 2018. Genetic baseline for mixed stock analyses of sockeye salmon harvested in Southeast Alaska for Pacific Salmon Treaty applications, 2018. Alaska Department of Fish and Game, Fishery Manuscript No. 18-03, Anchorage.
Witteveen, M. J., D. Evans, and K. R. Shedd. 2018. Stock assessment of sockeye salmon in the Buskin River, 2014–2017. Alaska Department of Fish and Game, Fishery Data Series No. 18-19, Anchorage.
2017
Barclay, A. W. 2017. Annual Genetic Stock Composition Estimates for the Upper Cook Inlet Sockeye Salmon Commercial Fishery, 2005–2016. Alaska Department of Fish and Game, Division of Commercial Fisheries, Regional Information Report 5J17-05, Anchorage.
Barclay, A. W., C. Habicht, W. Gist, E. L. Chenoweth, and T. M. Willette. 2017. Genetic stock identification of Upper Cook Inlet sockeye salmon harvest, 2012-2013 Alaska Department of Fish and Game, Division of Commercial Fisheries, Fishery Data Series No. 17-30, Anchorage.
Barclay, A. W., P. A. Crane, D. B. Young, H. A. Hoyt, and C. Habicht. 2017. Current status of genetic studies of coho salmon from Southcentral Alaska and evaluations for mixed-stock analysis in Cook Inlet. Alaska Department of Fish and Game, Fishery Manuscript Series No. 17-01, Anchorage.
Barclay, A. W., C. Habicht, W. Gist, and T. M. Willette. 2017. Genetic stock identification of Upper Cook Inlet coho salmon harvest, 2013-2015. Alaska Department of Fish and Game, Regional Information Report 5J17-03, Anchorage.
Eskelin, A., and A. W. Barclay. Eastside set gillnet chinook salmon harvest composition study in Upper Cook Inlet, Alaska, 2016, including large fish harvest for 2015 and 2016. Alaska Department of Fish and Game, Fishery Data Series No. 17-50, Anchorage.
Eskelin, A., and A. W. Barclay. 2017. Mixed stock analysis and age, sex, and length composition of Chinook salmon in the Eastside Set Gillnet Fishery in Upper Cook Inlet, Alaska, 2016, including an examination of large fish (=75 cm) harvest for 2015 and 2016. Alaska Department of Fish and Game, Regional Information Report 2A17-03, Anchorage.
Gilk-Baumer, S., D. F. Evenson, K. Shedd, and W. D. Templin. 2017. Mixed stock analysis of Chinook salmon harvested in Southeast Alaska commercial troll fisheries, 2015. Alaska Department of Fish and Game, Fishery Data Series No. 17-41, Anchorage.
Gilk-Baumer, S., D. F. Evenson, and W. D. Templin. 2017. Mixed stock analysis of Chinook salmon harvested in Southeast Alaska commercial troll fisheries, 2010-2014. Alaska Department of Fish and Game, Fishery Data Series No. 17-37, Anchorage.
Gilk-Baumer, S., K. Shedd, H. A. Hoyt, C. Habicht, W. D. Templin, S. Haught, and D. F. Evenson. 2017. Genetic stock composition of the commercial harvest of Chinook salmon in Copper River District, 2013-2017. Alaska Department of Fish and Game, Fishery Manuscript Series No. 17-09, Anchorage.
Gilk-Baumer, S., W. D. Templin, D.F. Evenson, and E. L. Jones. 2017. Mixed stock analysis of Chinook salmon harvested in the Southeast Alaska sport fishery, 2004-2015. Alaska Department of Fish and Game, Fishery Data Series No. 17-43, Anchorage.
Grant., W. Stewart and William D. Templin. Phylogeography of Geoduck Clams Panopea generosa in Southeastern Alaska (PDF 930 kB). Final Report and Supplemental Material of research funded by the NOAA Fisheries AK Region under award (Grant Number NA15NMF4270273) to Alaska Department of Fish & Game. 2017.
Grant., W. Stewart and William D. Templin. Phylogeography of Giant Red Sea Cucumbers Apostichopus californicus in the Northeastern Pacific (PDF 492 kB). Final Report of research funded by the NOAA Fisheries AK Region under award (Grant Number NA15NMF4270273) to Alaska Department of Fish & Game. 2017.
Larson, S., and T. Dann. 2017. Yukon River subsistence harvest genetic stock identification, 2017 Alaska Department of Fish and Game, Regional Information Report 3A18-03, Anchorage.
Shedd, K. R., M. B. Foster, and C. Habicht. 2017. YAddendum to FMS 16-10: Redefinition of reporting groups to separate Cook Inlet into four groups for the genetic stock composition of the commercial harvest of sockeye salmon in Kodiak Management Area, 2014–2016. Alaska Department of Fish and Game, Fishery Manuscript No. 17-07, Anchorage.
2016
Barclay, A. W., B. J. Failor, and C. Habicht. 2016. Report to the Alaska Board of Fisheries: Progress report on genetic and coded wire tag mixed stock analysis of Chinook salmon harvested in Cook Inlet marine sport fishery, 2014–2016. Alaska Department of Fish and Game, Division of Commercial Fisheries, Regional Information Report 5J16-09, Anchorage.
Barclay, A. W., C. Habicht, T. M. Willette, W. Gist, and W. D. Templin. 2016. Report to the Alaska State Legislature on status of Cook Inlet coho and sockeye salmon genetic projects, 2015. (PDF 935 kB) Alaska Department of Fish and Game, Division of Commercial Fisheries, Regional Information Report 5J16-02, Anchorage.
Barclay, A. W., C. Habicht, W. Gist, E. L. Chenoweth, and T. M. Willette. In press. Genetic stock identification of Upper Cook Inlet sockeye salmon harvest, 2012–2013. Alaska Department of Fish and Game, Fishery Data Series, Anchorage.
Dupuis, A. W., T. M. Willette, and A. Barclay. 2016. Migratory timing and abundance estimates of sockeye salmon into Upper Cook Inlet, Alaska, 2014. Alaska Department of Fish and Game, Fishery Data Series No. 16-43, Anchorage.
Eskelin, A., and A. W. Barclay. 2016. Mixed stock analysis and age, sex, and length composition of Chinook salmon in Upper Cook Inlet, Alaska, 2015. (PDF 1,174 kB) Alaska Department of Fish and Game, Fishery Data Series No. 16-16, Anchorage.
Shedd, K. R., T. H. Dann, H. A. Hoyt, M. B. Foster, and C. Habicht. 2016. Genetic baseline of North American sockeye salmon for mixed stock analyses of Kodiak Management Area commercial fisheries, 2014–2016. (PDF 3,362 kB) Alaska Department of Fish and Game, Fishery Manuscript Series No. 16-03, Anchorage.
Willette, T. M., R. D. DeCino, A. W. Barclay, and X. Zhang. 2016. An evaluation of the selectivity of fish wheels used to apportion sonar counts to species on the Yentna River, Alaska. Alaska Department of Fish and Game, Fishery Manuscript No. 16-02, Anchorage.
Witteveen, M. J., and K. Shedd. 2016. Chinook salmon genetic sampling along the Alaska Peninsula and adjacent areas results, 2012–2014. Alaska Department of Fish and Game, Fishery Data Series No. 16-25, Anchorage.
2015
Barclay, A. W., and C. Habicht. 2015. Genetic baseline for Upper Cook Inlet Chinook salmon: 42 SNPs and 7,917 fish. Alaska Department of Fish and Game, Fishery Manuscript Series No. 15-01, Anchorage.
Dupuis, A., M. Willette, and A. Barclay. 2015. Migratory timing and abundance estimates of sockeye salmon into Upper Cook Inlet, Alaska, 2013. Alaska Department of Fish and Game, Fishery Data Series No. 15-32, Anchorage.
Eskelin, T., and A. W. Barclay. 2015. Mixed stock analysis and age, sex, and length composition of Chinook salmon in Upper Cook Inlet, Alaska, 2014. Alaska Department of Fish and Game, Fishery Data Series No. 15-19, Anchorage.
Gilk-Baumer, S. E., S. D. Rogers Olive, D. K. Harris, S. C. Heinl, E. K. C. Fox, and W. D. Templin. 2015. Genetic mixed stock analysis of sockeye salmon harvests in selected northern Chatham Strait commercial fisheries, Southeast Alaska, 2012–2014. (PDF 2,302 kB) Alaska Department of Fish and Game, Fishery Data Series No. 15-03, Anchorage.
Grant, W. S., H. Liller, and W. Templin. 2015. Phylogeography and management of golden king crab populations in Alaska. (PDF 689 kB) Alaska Department of Fish and Game Commercial Fisheries Division, Regional Operational Plan ROP.CF.5J.2015.01, Anchorage.
2014
Barclay, A. W., N. A. DeCovich, C. Habicht, T. M. Willette, W. Gist, E. C. Volk and W. D. Templin. 2014. Report to the Alaska State Legislature on status of Cook Inlet coho and sockeye salmon genetic projects, 2014. (PDF 1,279 kB) Alaska Department of Fish and Game, Division of Commercial Fisheries, Regional Information Report 5J14-05, Anchorage.
Barclay, A. W., C. Habicht, T. Tobias, E. L. Chenoweth, and T. M. Willette. 2014. Genetic stock identification of Upper Cook Inlet sockeye salmon harvest, 2011. (PDF 3,021 kB) Alaska Department of Fish and Game, Fishery Data Series No. 14-43, Anchorage
Bernard, D. R., S. Gilk-Baumer, D. Evenson, W. D. Templin, R. L. Peterson and R. Briscoe. 2014. Feasibility of estimating the 2011 terminal run sizes for Chinook salmon driver stocks harvested in Southeast Alaska troll and sport fisheries. (PDF 1,156 kB) Alaska Department of Fish and Game, Fishery Manuscript No. 14-09, Anchorage.
Polum, T. B., D. Evans, and T. H. Dann. 2014. Stock assessment of sockeye salmon in the Buskin River, 2010–2013. (PDF 1,423 kB) Alaska Department of Fish and Game, Fishery Data Series No. 14-26, Anchorage.
Murphy, James, K. Howard, A. Andrews, Lisa Eisner, J. Gann, W. Templin, C. Guthrie, J. Moss, D. Honeyfield, K. Cos, and E. Farley. 2014. Yukon River juvenile Chinook Salmon survey. 2013 Arctic-Yukon-Kuskokwim Sustainable Salmon Initiative Project Final Product.
2013
Ackerman, M. W., W. D. Templin, J. E. Seeb, and L. W. Seeb. 2013. Landscape heterogeneity and local adaptation define the spatial genetic structure of Pacific salmon in a pristine environment. Conservation Genetics 14: 483-498.
Barclay, A. W., C. Habicht, T. Tobias, and T. M. Willette. 2013. Genetic stock identification of Upper Cook Inlet sockeye salmon harvest, 2010. Alaska Department of Fish and Game, Fishery Data Series No. 13-56, Anchorage.
DeCovich, N., A. Barclay, C. Habicht, M. Willette, L. Fair. E. Volk and W. Templin. 2013. Report to the Alaska State Legislature on status of Cook Inlet coho and sockeye salmon genetic projects, 2013. (PDF 1,397 kB) Alaska Department of Fish and Game, Division of Commercial Fisheries, Regional Information Report 5J13-12, Anchorage.
Eskelin, T., A. W. Barclay and A. Antonovich. 2013. Mixed stock analysis and age, sex, and length composition of Chinook salmon in the Eastside set gillnet fishery in Upper Cook Inlet, Alaska, 2010-2013. Alaska Department of Fish and Game, Fishery Data Series No. 13-63, Anchorage.
Eskelin, A., A. Antonovich, and A. W. Barclay. 2013. Upper Russian River late-run sockeye salmon run reconstructions, 2006–2008. Alaska Department of Fish and Game, Fishery Data Series No. 13-22, Anchorage.
Gilk-Baumer, S., S. M. Turner, C. Habicht, and S. C. Heinl. 2013. Genetic stock identification of McDonald Lake sockeye salmon in selected Southeast Alaska fisheries, 2007–2009. (PDF 1,435 kB) Alaska Department of Fish and Game, Fishery Manuscript Series No. 13-04, Anchorage.
Gilk-Baumer, S., W. D. Templin, and L. W. Seeb. 2013. Mixed stock analysis of Chinook salmon harvested in Southeast Alaska commercial troll fisheries, 2004-2009. (PDF 7,981 kB) Alaska Department of Fish and Game, Fishery Data Series No. 13-26, Anchorage.
Hyun, S., R. Sharma, W. D. Templin, and S. Gilk-Baumer. 2013. Incorporation of Genetic Stock Identification into Ocean Fishery Real-Time Forecasts. A Report to the NOAA NMFS Pacific Salmon Treaty — Chinook LOA Funding, Award No. NA11NMF4380152.
McKinley, T. R., A. W. Barclay and J. Jasper. 2013. Seasonal stock contributions of the inriver run and sport harvest for tributary and mainstem spawning Chinook salmon in the Kenai River, Alaska. Alaska Department of Fish and Game, Fishery Data Series No. 13-64, Anchorage.
Rogers, Olive, S. D., A. W. Barclay, T. R. McKinley, and W. D. Templin. 2013. Genetic baseline of Kenai River Chinook salmon for mixed stock analyses, 2013. (PDF 736 kB) Alaska Department of Fish and Game, Fishery Manuscript Series No. 13-12, Anchorage.
Witteveen, M., and T. H. Dann. 2013. Chinook Salmon Genetics Sampling Along the Alaska Peninsula and Adjacent Areas Operational Plan, 2013. Alaska Department of Fish and Game, Regional Information Report 4K13-06, Kodiak.
2012
Barclay, A. W. and C. Habicht. 2012. Genetic baseline for Upper Cook Inlet sockeye salmon: 96 SNPs and 10,000 fish. (PDF 611 kB) Alaska Department of Fish and Game, Fishery Manuscript Series No. 12-06, Anchorage.
Barclay, A. W., C. Habicht, R. A. Merizon, and R. J. Yanusz. 2012. Genetic Baseline for Upper Cook Inlet Chinook Salmon: 46 SNPs and 5,279 fish (PDF 1,132 kB). Alaska Department of Fish and Game, Fishery Manuscript Series No. 12-02, Anchorage.
Dann, T. H., A. Barclay and C. Habicht. 2012. Western Alaska Salmon Stock Identification Program Technical Document 5: Status of the SNP baseline for sockeye salmon. (PDF 1,469 kB) Alaska Department of Fish and Game, Division of Commercial Fisheries, Regional Information Report 5J12-10, Anchorage.
Dann, T. H., C. Habicht, and W. D. Templin. 2012. Western Alaska Salmon Stock Identification Program Technical Document 12: Tests of Togiak and Goodnews reporting groups for sockeye salmon. (PDF 597 kB) Alaska Department of Fish and Game, Regional Information Report 5J12-17, Anchorage.
Dann, T. H., C. Habicht, J. R. Jasper, E. K. C. Fox, H. A. Hoyt, H. L. Liller, E. S. Lardizabal, P. A. Kuriscak, Z. D. Grauvogel, and W. D. Templin. 2012. Sockeye salmon baseline for the Western Alaska Salmon Stock Identification Project. (PDF 9,421 kB) Alaska Department of Fish and Game, Special Publication No. 12-12, Anchorage.
Dann, T. H., C. Habicht, S. D. Rogers Olive, H. L. Liller, E .K .C. Fox, J. R. Jasper, A. R. Munro, M. J. Witteveen, T. T. Baker, K. G. Howard, E. C. Volk, and W. D. Templin. 2012. Stock Composition of Sockeye Salmon Harvests in Fisheries of the Western Alaska Salmon Stock Identification Program (WASSIP), 2006–2008. (Large PDF 10,624 kB) Alaska Department of Fish and Game, Special Publication No. 12-22, Anchorage.
Dann, T. H., J. R. Jasper, H. A. Hoyt, H. Hildebrand, and C. Habicht. 2012. Western Alaska Salmon Stock Identification Program Technical Document 6: Selection of the 96 SNP marker set for sockeye salmon. (PDF 3,539 kB) Alaska Department of Fish and Game, Division of Commercial Fisheries, Regional Information Report 5J12-11, Anchorage.
Dann, T. H., M. J. Witteveen, S. D. Rogers Olive, C. Habicht, M. B. Foster, H. L. Liller, and W. D. Templin. 2012. Genetic stock composition of the commercial harvest of sockeye salmon in Southeastern District Mainland, Alaska Peninsula Management Area, 2010–2012. (PDF 2,331 kB) Alaska Department of Fish and Game, Special Publication No. 12-31, Anchorage.
Dann, T. H., M. J. Witteveen, S. D. Rogers Olive, C. Habicht, M. B. Foster, H. L. Liller, and W. D. Templin. 2012. Genetic stock composition of the commercial harvest of sockeye salmon in Southeastern District Mainland, Alaska Peninsula Management Area, 2010–2012. (PDF 2,380 kB) Alaska Department of Fish and Game, Special Publication No. 12-31, Anchorage.
DeCovich, N. A., T. H. Dann, S. D. Rogers Olive, H. L. Liller, E. K. C. Fox, J. R. Jasper, E. L. Chenoweth, C. Habicht, and W. D. Templin. 2012. Chum salmon baseline for the Western Alaska Salmon Stock Identification Program. (PDF 5,400 kB) Alaska Department of Fish and Game, Special Publication No. 12-26, Anchorage.
Eggers, D. M., A. R. Munro, and E .C. Volk. 2012. Estimating escapement of Western Alaskan sockeye salmon for Western Alaska Salmon Stock Identification Program reporting groups, 2006 to 2008. (PDF 571 kB) Alaska Department of Fish and Game, Special Publication No. 12-15, Anchorage.
Eggers, D. M., A. R. Munro, and E. C. Volk. 2012. Estimating escapement of Western Alaskan chum salmon for Western Alaska Salmon Stock Identification Program reporting groups, 2007 to 2009. (PDF 1,152 kB) Alaska Department of Fish and Game, Special Publication No. 12-21, Anchorage.
Habicht, C., A. R. Munro, T. H. Dann, D. M. Eggers, W. D. Templin, M. J. Witteveen, T. T. Baker, K. G. Howard, S. D. Rogers Olive, H. L. Liller, E. L. Chenoweth, and E. C. Volk. 2012. Harvest and Harvest Rates of Sockeye Salmon Stocks in Fisheries of the Western Alaska Salmon Stock Identification Program (WASSIP), 2006–2008. (Very Large PDF 55,083 kB) Alaska Department of Fish and Game, Special Publication No. 12-24, Anchorage.
Habicht, C., J. R. Jasper, T. H. Dann, N. Decovich, and W. D. Templin. 2012. Western Alaska Salmon Stock Identification Program Technical Document 11: Defining reporting groups. (PDF 2,499 kB) Alaska Department of Fish and Game, Division of Commercial Fisheries, Regional Information Report 5J12-16, Anchorage.
Jasper, J. R., C. Habicht, A. R. Munro, and W. D. Templin. 2012. Western Alaska Salmon Stock Identification Program Technical Document 7: Regional allocation model. (PDF 624 kB) Alaska Department of Fish and Game, Regional Information Report 5J12-12, Anchorage.
Jasper, J. R., C. Habicht, and W. D. Templin. 2012. Western Alaska Salmon Stock Identification Program Technical Document 2: Investigation of temporal variation in sockeye and chum salmon baselines. (PDF 1,146 kB) Alaska Department of Fish and Game, Division of Commercial Fisheries, Regional Information Report 5J12-07, Anchorage.
Jasper, J. R., C. Habicht, W. D. Templin. 2012. Western Alaska Salmon Stock Identification Program Technical Document 3: Estimating small proportions. (PDF 486 kB) Alaska Department of Fish and Game, Division of Commercial Fisheries, Regional Information Report, 5J12-08, Anchorage.
Jasper, J. R., N. DeCovich, W. D. Templin. 2012. Western Alaska Salmon Stock Identification Program Technical Document 4: Status of the SNP baseline for chum salmon. (PDF 1,013 kB) Alaska Department of Fish and Game, Regional Information Report 5J12-09, Anchorage.
Jasper, J. R., S. M. Turner, and C. Habicht. 2012. Western Alaska Salmon Stock Identification Program Technical Document 13: Selection of a prior for mixed stock analysis. (PDF 1,426 kB) Alaska Department of Fish and Game, Division of Commercial Fisheries, Regional Information Report 5J12-20, Anchorage.
Jasper, J. R., W. D. Templin. 2012. Western Alaska Salmon Stock Identification Program Technical Document 10: Optimal rate of correct assignment with backward elimination locus selection. (PDF 408 kB) Alaska Department of Fish and Game, Division of Commercial Fisheries, Regional Information Report 5J12-19, Anchorage.
Munro, A. R., C. Habicht, T. H. Dann, D. M. Eggers, W. D. Templin, M. J. Witteveen, T. T. Baker, K. G. Howard, J. R. Jasper, S. D. Rogers Olive, H. L. Liller, E. L. Chenoweth, and E. C. Volk. 2012. Harvest and harvest rates of chum salmon stocks in fisheries of the Western Alaska Salmon Stock Identification Program (WASSIP), 2007–2009. (Very Large PDF 57,581 kB) Alaska Department of Fish and Game, Special Publication No. 12-25, Anchorage.
Templin, W. D., N. A. DeCovich, S. D. Rogers Olive, H. L. Liller, E. K. C. Fox, J. R. Jasper, T. T. Baker, K. G. Howard, A. R. Munro, E. C. Volk, and C. Habicht. 2012. Stock composition of chum salmon harvests in fisheries of the Western Alaska Salmon Stock Identification Program (WASSIP), 2007–2009. (Large PDF 13,547 kB) Alaska Department of Fish and Game, Special Publication No. 12-23, Anchorage.
Templin, W. D., S. Gilk-Baumer, J. Berger, and L. W. Seeb. 2012. Mixed stock analysis of sublegal Chinook salmon encountered in the Southeast Alaska troll fishery, 2004-2007. (PDF 3,412 kB) Alaska Department of Fish and Game, Fishery Data Series No. 12-34, Anchorage.
Templin, W., L. Seeb, J. Berger, R. Bloomquist, S. McPherson, and J. Carlile. 2012. Mixed stock analysis of sublegal Chinook salmon encountered in the Southeast Alaska troll fishery, 1998–2003. (PDF 402 kB) Alaska Department of Fish and Game, Fishery Data Series No. 12-32, Anchorage.
Weir, B. S., R. S. Waples and T. P. Quinn. 2012. Western Alaska Salmon Stock Identification Program Technical Document 1: Technical committee comments and review of the original proposal. (PDF 454 kB) Alaska Department of Fish and Game, Division of Commercial Fisheries, Regional Information Report 5J12-06, Anchorage.
2011
Barclay, A. W., C. Habicht, T. Tobias, and T. M. Willette. 2011. Genetic stock identification of Upper Cook Inlet sockeye salmon harvest, 2009. (PDF 1,297 kB) Alaska Department of Fish and Game, Fishery Data Series No. 10-93 Anchorage.
Dann, T. H., C. Habicht, H. A. Hoyt, T. T. Baker, and F. W. West. 2011. Genetic stock composition of the commercial harvest of sockeye salmon in Bristol Bay, Alaska, 2009. (PDF 1,535 kB) Alaska Department of Fish and Game, Fishery Data Series No. 11-21, Anchorage.
Eggers, D. M., M. J. Witteveen, T. T. Baker, D. F. Evenson, J. M. Berger, H. A. Hoyt, H. L. Hildebrand, W. D. Templin, C. Habicht, and E. C. Volk. 2011. Results from sampling the 2006-2009 commercial and subsistence fisheries in the Western Alaska Salmon Stock Identification Project. (PDF 11,719 kB) Alaska Department of Fish and Game, Special Publication No. 11-10, Anchorage.
Gilk, S.E., D. B. Molyneaux, and Z. W. Liller. 2011. Kuskokwim River sockeye salmon investigations, 2006 and 2007. (PDF 5,658 kB) Alaska Department of Fish and Game, Fishery Manuscript Series No. 11-04, Anchorage.
Templin, W. D., A. W. Barclay, J. M. Berger, L. W. Seeb, and S. D. Moffitt. 2011. Genetic stock identification of Copper River Chinook salmon harvest, 2005-2008. (PDF 1,233 kB) Alaska Department of Fish and Game, Fishery Manuscript Series No. 11-08, Anchorage.
Templin, W. D., J. M. Berger, and L. W. Seeb. 2011. Genetic stock identification of Chinook salmon harvested in the Southeast Alaska troll fishery, 1999–2003. (PDF 2,294 kB) Alaska Department of Fish and Game, Fishery Manuscript Series No. 11-03, Anchorage.
Templin, W. D., N. A. DeCovich, J. R. Guyon, S. E. Gilk-Baumer, D. B. Molyneaux, and L. W. Seeb. Genetic Stock Identification for Kuskokwim Area Chinook Salmon, Final report for Study 05-305. U.S. Fish and Wildlife Service Office of Subsistence Management Fisheries Resource Monitoring Program. (PDF 1,185 kB) May 2011.
2010
Barclay, A. W., C. Habicht, W. D. Templin, H. A. Hoyt, T. Tobias and T. M. Willette. 2010. Genetic stock identification of Upper Cook Inlet sockeye salmon harvest, 2005–2008. (PDF 4,673 kB) Alaska Department of Fish and Game, Fishery Manuscript No. 10-01, Anchorage.
Begich, R. N., W. D. Templin, A. W. Barclay, and L. W. Seeb. 2010. Development of microsatellite genetic markers for Kenai River Chinook salmon. (PDF 459 kB) Alaska Department of Fish and Game, Fishery Data Series No. 10-38, Anchorage.
DeCovich, N., and D. Evenson, 2010. Inseason genetic stock identification of Chinook salmon caught in the Lower Yukon River Test Fishery, 2009. (External PDF) Alaska Department of Fish and Game, Anchorage, Alaska.
DeCovich, N. A., W. D. Templin, and D. F. Evenson. 2010. Genetic stock identification of Chinook salmon harvest on the Yukon River 2008. (PDF 1,199 kB) Alaska Department of Fish and Game. Fishery Data Series No. 10-20, Anchorage.
2009
Dann, T. H., C. Habicht, J. R. Jasper, H. A. Hoyt, A. W. Barclay, W. D. Templin, T. T. Baker, F. W. West, and L. F. Fair. 2009. Genetic stock composition of the commercial harvest of sockeye salmon in Bristol Bay, Alaska, 2006–2008. (PDF 5,850 kB) Alaska Department of Fish and Game, Fishery Manuscript Series No. 09-06, Anchorage.
DeCovich, N. A., and W. D. Templin. 2009. Genetic stock identification of Chinook salmon harvest on the Yukon River 2007. (PDF 1,634 kB) Alaska Department of Fish and Game, Fishery Data Series No. 09-39, Anchorage.
Seeb, L. W., N. A. DeCovich, A. W. Barclay, C. T. Smith, and W. D. Templin. 2009. Timing and origin of Chinook salmon stocks in the Copper River and adjacent ocean fisheries using DNA markers. (PDF 916 kB) Alaska Department of Fish and Game, Fishery Data Series No. 09-58, Anchorage.
Stichert, M. A., T. J. Anderson, and T. H. Dann. 2009. Chignik Management Area salmon and herring annual management report, 2007. Alaska Department of Fish and Game, Fishery Management Report No. 09-09.
2008
DeCovich, N. A., H. A. Hoyt, Z. Grauvogel, and D. F. Evenson. 2008. Genetic Analysis of 13 Yukon River Chinook Salmon Baseline Collections. Final Report to the Yukon River Panel Project URE 11-07, Anchorage.
Templin, W. D., N. DeCovich, A. Barclay, C. T. Smith, L. W. Seeb. 2008. Timing and Origin of Chinook Salmon Stocks in the Copper River using DNA Markers Report to Alaska Board of Fisheries. (PDF 533 kB) Alaska Department of Fish and Game, Division of Commercial Fisheries, Special Publication 08-14, Anchorage.
Templin, W. D., N. A. DeCovich, and L. W. Seeb. 2008. Genetic stock identification of Chinook salmon harvest on the Yukon River, 2006. (PDF 401 kB) Alaska Department of Fish and Game, Fishery Data Series No. 08-15, Anchorage.
2007
Habicht, C., W. D. Templin, T. M. Willette, L. F. Fair, S. W. Raborn, and L. W. Seeb. 2007. Post-season stock composition analysis of Upper Cook Inlet sockeye salmon harvest, 2005-2007. (PDF 1,291 kB) Alaska Department of Fish and Game, Fishery Manuscript No. 07-07, Anchorage.
Pacific Salmon Commission Transboundary Technical Committee Report. Summary of the Transboundary Genetic Stock ID Workshop: January 18-19, 2007. Canadian Participants — S. Johnston, T. D. Beacham, J. Candy, I. Boyce, S. Cox-Rogers, P. Etherton, B. Waugh, and R. Erhardt. U.S. Participants — S. Kelly, L. W. Seeb, W. D. Templin, R. Wilmot, G. Oliver, K. Monagle, T. Thynes, K. Jensen, and E. Volk. 2007. Pacific Salmon Commission Transboundary Technical Committee Report TCTR (07)-02.
2006
Flannery, B. G., T. D. Beacham, M. Wetklo, C. T. Smith, W. D. Templin, A. Antonovich, L. W. Seeb, S. Miller, O. Schlei, and J. K. Wenburg. 2006. Run timing, migratory patterns, and harvest information of Chinook salmon stocks within the Yukon River. Alaska Fisheries Technical Report Number 92. October 2006. U. S. Fish and Wildlife Service.
Flannery, B., T. D. Beacham, M. Wetklo, C. T. Smith, W. D. Templin, A. Antonovich, L.W. Seeb, S. Miller, O. Schlei, and J. K. Wenburg. 2006. Run Timing, Migratory Patterns, and Harvest Information of Chinook Salmon Stocks within the Yukon River. Alaska Fisheries Technical Report Number 92. October 2006 U. S. Fish and Wildlife Service.
Seeb, L. W., D. Moore, C. T. Smith, and W. D. Templin. 2006. Progress in development of a DNA baseline for genetic identification of Chinook salmon stocks of the Copper River Basin, Alaska. (PDF 189 kB) Department of Fish and Game, Fishery Data Series No. 06-20, Anchorage.
Seeb, L.W and J.E. Seeb. 2006. Report of the Second Annual SNP Workshop, Anchorage, Alaska, USA, Sept. 21-22, 2006. (NPAFC Doc. 996). 11 p. Alaska Department of Fish and Game, 333 Raspberry Road, Anchorage, AK 99518, USA.
Templin, W. D, N. A. DeCovich, and L. W. Seeb. 2006. Yukon River Chinook salmon genetic baseline: Survey of Pacific Salmon Commission loci for U.S. populations. (PDF 171 kB) Alaska Department of Fish and Game, Fishery Data Series No. 06-46, Anchorage.
Templin, W. D., J. M. Berger, N. A. DeCovich, and L. W. Seeb. 2006. Genetic stock identification of Chinook salmon harvest on the Yukon River in 2004. (PDF 956 kB) Alaska Department of Fish and Game, Division of Commercial Fisheries, Regional Information Report No. 3A06-06, Anchorage.
2005
Costello, D. J., S. E. Gilk, and D. B. Molyneaux. 2005. Takotna River salmon studies, 2004. Alaska Department of Fish and Game, Fishery Data Series No. 05-71, Anchorage.
Gilk, S. E., W. D. Templin, D. B. Molyneaux, T. Hamazaki, and J. A. Pawluk. 2005. Characteristics of fall chum salmon Oncorhynchus keta in the Kuskokwim River drainage. (PDF 1,066 kB) Alaska Department of Fish and Game, Fishery Data Series No. 05-56, Anchorage.
Habicht, C., C. Smith, and M. Link. 2005. Estimating run timing of Lake Clark sockeye salmon relative to other Kvichak River drainage populations. (External PDF) USFWS Office of Subsistence Management, Fisheries Resource Monitoring Program, Annual Report for study 04-411, Anchorage, Alaska.
Habicht, C., N. V. Varnavskaya, T. Azumaya, S. Urawa, R. L. Wilmot, C. M. Guthrie. III, and J. E. Seeb. 2005. Migration patterns of sockeye salmon in the Bering Sea discerned from stock composition estimates of fish captured during BASIS studies. (External PDF) North Pacific Anadromous Fish Commission Technical Report No. 6: 41-43.
Helle, J. H., K. W. Myers, and J. E. Seeb. 2005. National overview of BASIS research for the United States. (External PDF) North Pacific Anadromous Fish Commission Technical Report No. 6: 13-15.
Seeb, J.E., R. L. Wilmot, S. Urawa, S. Abe, L. W. Seeb, and C. T. Smith. 2005. Single nucleotide polymorphisms (SNPs) provide standard DNA data for Bering/Aleutian Salmon International Survey (BASIS) Studies. (External PDF) North Pacific Anadromous Fish Commission Technical Report No. 6.
Seeb, L.W., W. D. Templin, C. T. Smith, C. M. Elfstrom, S. Urawa, R. L. Wilmot, S. Abe, and J. E. Seeb. 2005. SNPs provide an easily-standardized baseline for NPAFC studies of chum salmon. (External PDF) North Pacific Anadromous Fish Commission Document 907.
Templin, W. D., C. T. Smith, J. E. Seeb, and L. W. Seeb. 2005. SNPs provide high-throughput resolution for migratory studies of Chinook salmon. (External PDF) North Pacific Anadromous Fish Commission Document 908.
Zelenina, D., A. Khrustaleva, A. Volkov, C. Habicht, C. T. Smith, and J. E. Seeb, 2006. A case study of two genetic markers for inter-laboratory collaboration: SNPs provide transportability without standardization. (External PDF) North Pacific Anadromous Fish Commission Document 913.
2004
Gilk, S. E., D. B. Molyneaux, et al. (2004). Takotna River salmon studies and upper Kuskokwim River aerial surveys, 2003. Anchorage, Alaska Dept. of Fish and Game, Division of Commercial Fisheries, Arctic-Yukon-Kuskokwim Region, Regional Information Report, No. 3A04-25, Anchorage.
Habicht, C., C. M. Guthrie, R. L. Wilmot, and J. E. Seeb. 2004. Microsatellites, allozymes, and SNPs describe the population structure and identify spatial distribution of mixture components of sockeye salmon in the Bering Sea. (External PDF) North Pacific Anadromous Fish Commission Technical Report 5: 62-64.
Sheldon, C. A., S. E. Gilk, et al. (2004). Kogrukluk River weir salmon studies, 2003. Anchorage., Alaska Department of Fish and Game, Division of Commercial Fisheries, Regional Information Report 3A04-22.
Templin, W.D., C.T. Smith, D. Molyneaux, and L.W. Seeb. 2004. Genetic Diversity of Chinook Salmon from the Kuskokwim River. (External PDF) USFWS Office of Subsistence Management, Fisheries Resource Monitoring Program, Final Report No. 01-070, Anchorage, Alaska. pdf
Smith, C. T., J. E. Seeb, and L. W. Seeb. 2004. Development of 5'-Nuclease Reactions for High-Throughput SNP Genotyping in Salmon. (External PDF) North Pacific Anadromous Fish Commission Technical Report No. 5: 45-46.
2003
Antonovich, A. and W.D. Templin. 2003. Application of Bayesian mixed stock analysis for detection of small contributions in fish mixtures. (PDF 764 kB) Report to the Gene Conservation Laboratory, Alaska Department of Fish and Game June 2003.
Smith, C.T., L. W. Seeb, and J. E. Seeb. 2003. Single nucleotide polymorphism (SNP) genotyping using the 5'-nuclease reaction provides high-throughput/high-resolution stock identification of Chinook, sockeye, and chum salmon. (External PDF) North Pacific Anadromous Fish Commission Document 733.
2002
Abe, S., S. Sato, H. Kojima, J. Ando, H. Ando, R. L. Wilmot, L. W. Seeb, V. Efremov, L. Leclair, W. Buchholz, D. Jin, S. Urawa, M. Kaeriyama, and A. Urano. 2002. Genetic differentiation among Pacific Rim populations of chum salmon inferred from mitochondrial DNA sequence variation. (External PDF) (North Pacific Anadromous Fish Commission Document 616) 27 pages. Laboratory of Animal Cytogenetics, Center for Advanced Science and Technology, Hokkaido University, North 10, West 8, Kita-ku,Sapporo 060-0810, Japan.
Kondzela, C.M., P. A. Crane, S. Urawa, J. B. Burger, N. V. Varnavskaya, V. V. Efremov, X. Luan, W. D. Templin, K. Hayashizaki, R. L. Wilmot, and L. W. Seeb. 2002. Development of a comprehensive allozyme baseline for Pacific Rim chum salmon. (External PDF) North Pacific Anadromous Fish Commission Document 629.
2001
Crane, P.A., C. M. Kondzela, and L. W. Seeb. 2001. History and use of allozyme baselines for Pacific Rim chum salmon. (External PDF) North Pacific Anadromous Fish Commission Document 561.
Crane, P.A., W. J. Spearman, and L. W. Seeb 2001. Yukon River chum salmon: Report for genetic stock identification studies, 1992–1997. (PDF 240 kB) Alaska Department of Fish and Game Regional Information Report No. 5J01-08. Alaska Department of Fish and Game, Anchorage, Alaska..
Habicht, C, W. D Templin, C. M Guthrie III, R. L. Wilmot, G. A. Winans, E. Iwamoto, J. E. Seeb, and L. W. Seeb. 2001. Status report for genetic stock identification studies of Pacific Rim sockeye salmon. (External PDF) North Pacific Anadromous Fish Commission Document 562.
Moore, D. and J. E. Seeb. 2001. Annotated Bibliography of the Genetics of Bivalve Mollusks. (PDF 424 kB) Alaska Department of Fish and Game, Anchorage, Alaska. Regional Information Report No. 5J01-09.
Reynolds, J. H. 2001. SPAM Version 3.5: User's Guide Addendum. Addendum to Special Publication No. 15, Alaska Dept. of Fish and Game, Division of Commercial Fisheries, Gene Conservation Laboratory, 333 Raspberry Road, Anchorage, AK 99518.
Templin, W. D. 2001. The history of propagation and transportation of Chinook salmon Oncorhynchus tshawytscha stocks in Southeast Alaska hatcheries, 1972–1998. (PDF 322 kB) Alaska Department of Fish and Game, Anchorage, Alaska. Regional Information Report No. 5J01-05.
2000
Alaska Department of Fish and Game. 2000. SPAM 3.2 User's Guide. Special Publication No. 15, Division of Commercial Fisheries Gene Conservation Laboratory, 333 Raspberry Road, Anchorage, AK 99518.
Crane, P. A., W. D. Templin, D. M. Eggers, and L. W. Seeb. 2000. Genetic stock identification of Southeast Alaska Chinook salmon fishery catches. Final Report of the Alaska Department of Fish and Game to US Chinook Technical Committee. (PDF 2,292 kB) Alaska Department of Fish and Game, Anchorage, Alaska. Regional Information Report No. 5J00-01. Alaska Dept. of Fish and Game, Division of Commercial Fisheries, Anchorage, AK 99518.
Crane, P. A. and L. W. Seeb. 2000. Genetic analysis of chum salmon harvested in the South Peninsula post June fishery, 1996–1997. (PDF 161 kB) Alaska Department of Fish and Game, Anchorage, Alaska, Regional Information Report 5J00-05. Alaska Dept. of Fish and Game, Division of Commercial Fisheries, Anchorage, AK 99518.
Habicht, C., E. M. Simpson, and J. E. Seeb. 2000. Broodstock acquisition and release sites for hatcheries producing pink salmon in Prince William Sound. (PDF 374 kB) Alaska Department of Fish and Game, Regional Information Report No. 5J00-07. Alaska Dept. of Fish and Game, Division of Commercial Fisheries, Anchorage, AK 99518.
1999
Seeb, J. E., S. E. Merkouris, L. W. Seeb, J. B. Olsen, P. Bentzen, and J. M. Wright. 1999. Genetic discrimination of Prince William Sound herring populations. Exxon Valdez Oil Spill Restoration Project Final Report 97165.
Seeb, J. E. and C. Habicht. 1999. Laboratory Examination of Oil-Related Embryo Mortalities that Persist in Pink Salmon Populations in Prince William Sound, Restoration Project 97191A-2 Final Report. (External PDF) Exxon Valdez Oil Spill Trustee Council.
Teel, D. J., P. A. Crane, C. M. I. Guthrie, A. R. Marshall, D. M. Van Doornik, W. D. Templin, N. V. Varnavskaya, and L. W. Seeb. 1999. Comprehensive allozyme database discriminates Chinook salmon around the Pacific Rim. (External PDF) North Pacific Anadromous Fish Commission Document 440.
Templin, W.D., L. W. Seeb, P. A. Crane, and J. E. Seeb. 1999. Genetic analysis of sockeye populations from the Chignik Watershed, Final Report to Chignik Regional Aquaculture Association pursuant to Cooperative Agreement No. 98-024. (PDF 1,384 kB) Alaska Department of Fish and Game Regional Information Report No. 5J99-08. Alaska Dept. of Fish and Game, Division of Commercial Fisheries, Anchorage, AK 99518.
1998
Seeb L .W., P. A. Crane, and E. M. Debevec. 1998. Genetic analysis of chum salmon harvested in the South Unimak and Shumagin Islands June fisheries, 1993–1996. (PDF 344 kB) Alaska Department of Fish and Game Regional Information Report No. 5J97-17. Supplemental Appendices Regional Information Report No. 5J97-18. (PDF 1,961 kB)
Seeb L .W., P. A. Crane, and E. M. Debevec. 1998. Genetic analysis of chum salmon harvested in the South Unimak and Shumagin Islands June Fisheries, 1993-1996. Regional Information Report No. 5J97-17, Alaska Department of Fish and Game, Anchorage, AK.
1997
Seeb, L. W., P. A. Crane, E. M. Debevec. Genetic Analysis of Chum Salmon Harvested in the South Unimak and Shumagin Islands June Fisheries, 1993–1996. (PDF 344 kB) Regional Information Report No. 5J97-17. Alaska Department of Fish and Game, Division of Commercial Fisheries, Anchorage, Alaska.
Seeb, L. W., P. A. Crane, and E. M. Debevec. 1997. Supplementary appendices: genetic analysis of chum salmon harvested in the South Unimak and Shumagin Islands June Fisheries, 1993–1996. (PDF 1,997 kB) Regional Information Report No. 5J97-18. Alaska Department of Fish and Game, Anchorage, AK.
Seeb, L.W., W. D. Templin, K. E. Tarbox, R. Z. Davis, and J. E. Seeb. 1997. Kenai River sockeye salmon restoration, Restoration Project 96255-2 Final Report. (External PDF) Exxon Valdez Oil Spill Trustee Council.
1996
Crane, P. A., W. D. Templin, and L. W. Seeb. 1996. Genetic stock identification of Alaska Chinook salmon. Final report of the Alaska Department of Fish and Game pursuant to National Oceanic and Atmospheric Administration Awards No. NA46FD0356. Regional Information Report No. 5J96-17. Alaska Department of Fish and Game, Division of Commercial Fisheries, Anchorage, AK
Seeb, J. E., C. Habicht, W. D. Templin, and L. W. Seeb. 1997. Genetics of populations of pink salmon inhabiting Prince William Sound. Annual Report, Restoration Project 94320D and 95320D. Exxon Valdez Oil Spill Trustee Council, Anchorage, AK.
Seeb, J. E., S. E. Merkouris, L. W. Seeb, P. Bentzen, J. M. Wright. 1996. Genetic Discrimination of Prince William Sound Herring Populations. Annual Report Restoration Project 95165. Exxon Valdez Oil Spill Trustee Council, Anchorage, AK.
1995
Sarafin, D. R. Chum Salmon Genetic Stock Identification; 1994 South Alaska Peninsula Fishery Sample Collection. (PDF 547 kB) Regional Information Report No. 5J95-10. Alaska Department of Fish and Game, Division of Commercial Fisheries, Anchorage, AK
Sarafin, D. R., P. A. Crane, and L. W. Seeb. 1995. Chum salmon genetic stock identification: baseline and fishery sample collection, 1991-1993. (PDF 1,023 kB) Regional Information Report No. 5J95-08. Alaska Department of Fish and Game, Anchorage, Alaska.
Sarafin, D.R. 1995. Toklat River chum salmon stock identification; sample collection and genetic analyses, 1985-1994. (PDF 1,577 kB) Regional Information Report No. 5J95-23, Alaska Department of Fish and Game, Anchorage, Alaska.
Seeb, L. W. and P. A. Crane. 1995. Mixed stock analysis of Pacific Rim chum salmon in the 1993 and 1994 South Alaska Peninsula June fisheries using allozyme and mitochondrial DNA data (North Pacific Anadromous Fish Commission Document 165). (External PDF) Alaska Department of Fish and Game, 333 Raspberry Road, Anchorage, Alaska, 39pp.
Seeb, L. W., C. Habicht, W. D. Templin, J. W. Fetzner, Jr., R. B. Gates, J. E. Seeb. Genetic Diversity of Sockeye Salmon (Oncorhynchus nerka) of Cook Inlet, Alaska, and its Application to Restoration of Injured Populations of the Kenai River. (External PDF) Restoration Projects 93012 and 94255-2 Final Report. Exxon Valdez Oil Spill Trustee Council.
Seeb, L. W., P. A. Crane, and R. B. Gates. 1995. Progress report of genetic studies of Pacific Rim chum salmon and preliminary analysis of the 1993 and 1994 South Unimak June Fisheries. (PDF 4,010 kB) Regional Information Report No. 5J95-07. Alaska Department of Fish and Game, Anchorage, AK
Seeb, L.W., P. A. Crane, and W. D. Templin. 1995. Genetic stock identification of Alaska Chinook salmon: a report of the Alaska Department of Fish and Game pursuant to National Oceanic and Atmospheric Administration Award No. NA26FD0157-01. (PDF 1,858 kB) Regional Information Report No. 5J95-18, Alaska Department of Fish and Game, Anchorage, AK, 48 pp.
1994
Crane, P. A., L. W. Seeb, and R. B. Gates. 1994. Yukon River Chum Salmon: progress report for genetic stock identification studies July 1, 1992 – June 30, 1994. Alaska Department of Fish and Game, Anchorage, AK. Regional Information Report No. 5J94-19.
Seeb, L.W. 1994. Status report for genetic stock identification studies of Pacific Rim chum salmon. North Pacific Anadromous Fish Commission Document 84.
Sharr, S., J. E. Seeb, B. G. Bue, A. Craig, and G. D. Miller. 1994. Injury to salmon eggs and preemergent fry in Prince William Sound. Exxon Valdez Oil Spill Restoration Project Final Report, Restoration Project 93003, Alaska Department of Fish and Game, Commercial Fisheries Management and Development Division, Cordova, Alaska.
Sharr, S., J. E. Seeb, B. G. Bue, S. D. Moffitt, A. Craig, and G. D. Miller. Injury to salmon eggs and preemergent fry in Prince William Sound-Restoration Study Number R60C. (PDF 4,193 kB) Alaska Department of Fish and Game, Alaska Department of Fish and Game, Division of Commercial Fisheries Management and Development. Regional Information Report 2A94-50, Anchorage.
1993
Seeb, L. W., J. E. Seeb, R. B. Gates, and C. Habicht. 1993. Assessment of genetic stock structure of salmonids. Exxon Valdez Oil Spill State/Federal Natural Resource Damage Assessment Annual Report, Restoration Study Number 59. Alaska Department of Fish and Game, Commercial Fisheries Management and Development Division, Anchorage, Alaska.
Seeb, J. E., C. Habicht, and G. D. Miller. 1993. Use of triploids for gene conservation of salmonids. [In]: M. R. Collie and J.P. McVey, editors. Interactions Between Cultured Species and Naturally Occurring Species in the Environment. Proceedings of the twenty-second U.S.-Japan Aquaculture Panel Symposium. Alaska Sea Grant Report AK-SG-95-03.
1992
Sarafin, D.R. 1992. Genetic stock identification, baseline data collection; Westward Region, field summary. Alaska Department of Fish and Game, Anchorage, AK. Regional Information Report No. 4K92-35.
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